STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2640PspA/IM30 family protein. (238 aa)    
Predicted Functional Partners:
GFO_2638
Conserved hypothetical protein.
 
  
 0.977
GFO_0991
Membrane protein containing PspC domain.
  
 
 0.963
GFO_2639
Membrane protein.
 
     0.951
GFO_2641
Conserved hypothetical protein.
 
     0.950
GFO_2393
Hypothetical protein.
  
 
 0.893
GFO_2637
Conserved hypothetical protein.
 
     0.887
GFO_2642
HTH_3 family transcriptional regulator protein.
 
    0.859
GFO_0848
Two-component system sensor histidine kinase/response regulator hybrid.
    
 
 0.855
GFO_0149
Two-component system sensor histidine kinase.
    
 
 0.530
GFO_1684
Two-component system sensor histidine kinase/methyl-esterase/transferase hybrid.
   
 
 0.530
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.