STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2708Conserved hypothetical protein. (259 aa)    
Predicted Functional Partners:
GFO_2707
Protein containing DUF34; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
  
 0.881
GFO_0212
Surface antigen D15 family outer membrane protein.
  
     0.753
GFO_3182
Conserved hypothetical protein.
 
     0.750
hemD
uroporphyrinogen-III synthase.
  
     0.726
lolE
Lipoprotein releasing system transmembrane protein.
  
     0.713
GFO_1447
Conserved hypothetical protein.
  
     0.695
GFO_0649
Conserved hypothetical protein.
 
     0.692
GFO_3340
Protein containing DUF177.
  
     0.669
GFO_3531
Conserved hypothetical protein, secreted.
  
     0.667
GFO_3592
Conserved hypothetical protein, membrane or secreted.
  
     0.658
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.