STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2718Short-chain dehydrogenase/reductase family protein. (252 aa)    
Predicted Functional Partners:
GFO_2719
Hypothetical protein.
       0.648
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 0.626
GFO_2717
Membrane protein.
  
    0.570
GFO_0359
Sulfatase.
   
 
 0.544
GFO_1698
Sulfatase.
   
 
 0.544
fabF
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
   0.450
GFO_1660
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   0.445
GFO_3277
PaaE-like NADH oxidoreductase-possibly involved in phenylacetic acid degradation.
   
 
 0.436
gatA
glutamyl-tRNA(Gln) amidotransferase subunit A.
 
  
 0.425
GFO_2020
MaoC-like domain protein.
 
 0.423
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.