STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2755Conserved hypothetical protein. (470 aa)    
Predicted Functional Partners:
GFO_2756
TonB-dependent outer membrane receptor.
 
   
 0.939
parB
ParB-like chromosome partition protein; Belongs to the ParB family.
  
 
 0.706
dacB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine endopeptidase.
 
     0.703
GFO_2850
TonB-dependent outer membrane receptor.
 
   
 0.652
GFO_1262
TonB-dependent outer membrane receptor.
 
     0.649
GFO_0010
TonB-dependent outer membrane receptor.
  
 
   0.644
GFO_0011
SusD/RagB family protein containing tetratricopeptide repeats.
  
   0.620
GFO_2754
N-acetylmuramoyl-L-alanine amidase.
 
     0.617
GFO_1261
FecR family protein.
  
     0.589
GFO_2753
Secreted peptidase, family M14.
 
     0.581
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.