STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2845SusD/RagB family protein. (549 aa)    
Predicted Functional Partners:
GFO_2844
TonB-dependent outer membrane receptor.
 
    0.937
GFO_1058
Hypothetical protein.
  
     0.617
GFO_0674
HTH_3 family transcriptional regulator protein.
  
     0.571
GFO_0041
Membrane protein containing DUF81.
  
     0.507
GFO_3605
Conserved hypothetical protein, membrane or secreted.
  
     0.501
GFO_3604
TonB-dependent outer membrane receptor.
  
     0.499
GFO_1206
Sodium/calcium exchanger protein.
  
     0.489
GFO_0362
SusD/RagB family protein containing tetratricopeptide repeat.
  
 
   0.482
GFO_1196
Membrane protein containing divergent AAA domain.
  
     0.480
GFO_3606
Sodium:solute symporter family protein.
  
     0.464
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.