STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreCRod shape-determining protein MreC; Involved in formation and maintenance of cell shape. (274 aa)    
Predicted Functional Partners:
mreB
Rod shape-determining protein MreB.
 
 
 0.987
mrdA
Penicillin-binding protein.
 
 
 0.958
mrdB
Rod shape-determining protein MrdB; Belongs to the SEDS family.
 
  
 0.919
GFO_2960
Conserved hypothetical protein, membrane.
 
    0.850
ftsI
FtsI-like transpeptidase/penicillin-binding protein.
 
 
 0.697
purH
Bifunctional purine biosynthesis protein.
       0.652
maf
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.618
GFO_1228
RadC-like DNA repair protein.
  
  
 0.597
GFO_1232
Protein containing domain of DNA repair protein RadC.
  
  
 0.597
GFO_1350
RadC-like DNA repair protein.
  
  
 0.597
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.