STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2969Conserved hypothetical protein, secreted. (180 aa)    
Predicted Functional Partners:
GFO_2327
Conserved hypothetical protein.
  
     0.568
GFO_2970
POT family amino acid/peptide transporter.
       0.562
GFO_2971
POT family amino acid/peptide transporter.
       0.496
clpS
ATP-dependent Clp protease adaptor protein; Belongs to the ClpS family.
  
     0.471
GFO_2972
Dipeptidyl-peptidase IV.
       0.471
GFO_0185
Conserved hypothetical protein, membrane or secreted.
  
     0.428
GFO_0503
Membrane or secreted YceI-like family protein; Belongs to the UPF0312 family.
  
     0.421
GFO_0648
Conserved hypothetical protein.
  
     0.402
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.