STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3003Conserved hypothetical protein, secreted. (200 aa)    
Predicted Functional Partners:
GFO_2266
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.690
GFO_2974
Hypothetical protein.
    
   0.545
GFO_3629
Protein containing mevalonate and galactokinase signatures.
    
   0.545
GFO_0487
Membrane protein containing DUF1328.
   
    0.516
GFO_1615
Membrane protein containing DUF1328.
   
    0.516
GFO_3002
Secreted amidohydrolase.
       0.509
GFO_0546
ABC-type transporter ATP-binding protein.
   
    0.493
GFO_0539
Polysaccharide export outer membrane protein.
   
    0.489
GFO_1984
Polysaccharide export protein.
   
    0.489
GFO_0542
O-antigen export system permease protein.
   
    0.488
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.