STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3003Conserved hypothetical protein, secreted. (200 aa)    
Predicted Functional Partners:
GFO_2266
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.698
GFO_2974
Hypothetical protein.
    
   0.676
GFO_3629
Protein containing mevalonate and galactokinase signatures.
    
   0.676
GFO_0487
Membrane protein containing DUF1328.
   
    0.527
GFO_1615
Membrane protein containing DUF1328.
   
    0.527
GFO_3002
Secreted amidohydrolase.
       0.509
GFO_0546
ABC-type transporter ATP-binding protein.
   
    0.491
GFO_2160
Conserved hypothetical protein.
   
    0.491
glmS
Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
    0.491
GFO_0539
Polysaccharide export outer membrane protein.
   
    0.471
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.