STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3009HlyD family secretion protein. (391 aa)    
Predicted Functional Partners:
GFO_3007
Outer membrane efflux protein.
 
   0.969
GFO_3008
AcrB/AcrD/AcrF family membrane transport protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.967
GFO_3006
Hypothetical protein.
       0.773
GFO_0029
AcrB/AcrD/AcrF family heavy metal cation efflux protein containing OEP domain; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.696
GFO_1186
AcrB/AcrD/AcrF family heavy metal cation efflux protein containing OEP domains; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.696
GFO_1294
AcrB/AcrD/AcrF family heavy metal cation efflux protein containing OEP domains; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.696
GFO_3010
ABC-type transporter ATP-binding protein.
       0.616
GFO_3005
Conserved hypothetical protein.
       0.605
GFO_2336
Membrane protein.
  
     0.584
GFO_2929
Conserved hypothetical protein, secreted.
  
    0.493
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.