STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3029Conserved hypothetical protein. (148 aa)    
Predicted Functional Partners:
kat
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.664
GFO_2212
Secreted protein.
  
     0.649
GFO_0160
Membrane protein containing cytochrome c domain.
  
 
 0.615
GFO_1345
Membrane protein containing DUF304.
  
    0.595
GFO_1903
Eukaryotic DNA topoisomerase I-like protein.
 
    0.585
GFO_2266
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.503
GFO_3620
Conserved hypothetical protein, membrane.
  
    0.486
GFO_1753
Conserved hypothetical protein.
   
    0.457
rpsP
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
       0.434
dnaE
DNA polymerase III subunit alpha-1.
       0.433
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.