STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3053Two-component system response regulator containing sigma-54 interaction domain. (450 aa)    
Predicted Functional Partners:
GFO_0728
Two-component system response regulator containing sigma-54 interaction domain.
  
  
 
0.910
GFO_1684
Two-component system sensor histidine kinase/methyl-esterase/transferase hybrid.
  
 
 0.837
GFO_1960
Two-component system sensor histidine kinase/methyl-esterase/transferase hybrid.
  
 
 0.819
rpoN
RNA polymerase sigma-54 factor.
 
  
 0.799
GFO_3052
Two-component system sensor histidine kinase/response regulator hybrid.
 
 
 0.716
GFO_3054
Hypothetical protein.
       0.631
GFO_2705
Two-component system sensor histidine kinase/response regulator hybrid.
 
 
 0.621
GFO_0848
Two-component system sensor histidine kinase/response regulator hybrid.
 
 
 0.587
GFO_0335
Secreted protein.
  
  
 0.572
GFO_2345
Two-component system sensor histidine kinase/response regulator hybrid.
 
 
 0.522
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.