STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3101Histone deacetylase family protein. (300 aa)    
Predicted Functional Partners:
GFO_1974
Secreted flavin-containing amine oxidoreductase.
   
 0.886
GFO_3564
Conserved hypothetical protein.
  
 0.828
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
   
 0.793
GFO_2575
Protein containing AAA ATPase domain.
   
 0.790
npdA
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.693
udk
Uridine kinase.
   
 0.669
GFO_0786
cyclophilin/FKBP-type peptidyl-prolyl cis-trans isomerase.
   
 0.653
GFO_2538
cyclophilin/FKBP-type peptidyl-prolyl cis-trans isomerase.
   
 0.653
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
   0.580
GFO_2102
HPP family protein.
  
  
 0.563
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.