STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3127Protein containing Fe-S metabolism associated domain. (140 aa)    
Predicted Functional Partners:
sufS
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.983
GFO_3126
Protein containing DUF59.
     0.958
GFO_3125
Conserved hypothetical protein.
       0.822
sufB
FeS assembly protein SufB.
 
 
 0.792
sufD
FeS assembly protein SufD.
 
 
 0.788
GFO_3124
Conserved hypothetical protein, secreted.
       0.781
GFO_3445
Cysteine desulfurase-like protein.
 
 
 0.772
sufC
FeS assembly ATPase SufC.
 
   0.763
GFO_0281
class-V aminotransferase.
  
 
 0.702
GFO_3128
Hypothetical protein.
       0.667
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.