STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3151class-I/II aminotransferase. (384 aa)    
Predicted Functional Partners:
GFO_3152
Protein containing phosphoesterase domain.
       0.773
GFO_3153
Conserved hypothetical protein, membrane.
       0.757
pheA
Prephenate dehydratase.
 
  
 0.591
sdhB
Succinate dehydrogenase iron-sulfur protein.
  
  
 0.588
thrA
Bifunctional aspartokinase/homoserine dehydrogenase.
  
 
 0.565
GFO_3530
Carbon-nitrogen hydrolase.
  
 0.555
GFO_3154
Hypothetical protein.
       0.553
GFO_3155
Conserved hypothetical protein.
       0.553
maeB
NADP-dependent malic enzyme.
  
 
 0.543
serA
D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.485
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.