STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3153Conserved hypothetical protein, membrane. (263 aa)    
Predicted Functional Partners:
GFO_3152
Protein containing phosphoesterase domain.
       0.769
GFO_3151
class-I/II aminotransferase.
       0.757
GFO_2212
Secreted protein.
  
     0.583
sdhB
Succinate dehydrogenase iron-sulfur protein.
     
 0.582
GFO_3154
Hypothetical protein.
       0.565
GFO_3155
Conserved hypothetical protein.
       0.565
GFO_1838
OmpA/MotB family outer membrane protein.
  
 
 0.557
GFO_2865
OmpA/MotB family outer membrane protein.
  
 
 0.557
GFO_1634
Family 3 glycosyl hydrolase/beta-lactamase fusion protein.
  
  
 0.548
bglX
Glycoside hydrolase, family 3-likely beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
  
  
 0.523
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.