Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GFO_0359 | GFO_3157 | GFO_0359 | GFO_3157 | Sulfatase. | Short-chain dehydrogenase/reductase family protein. | 0.620 |
GFO_1047 | GFO_3157 | GFO_1047 | GFO_3157 | 3-hydroxyacyl-CoA dehydrogenase. | Short-chain dehydrogenase/reductase family protein. | 0.406 |
GFO_1047 | GFO_3277 | GFO_1047 | GFO_3277 | 3-hydroxyacyl-CoA dehydrogenase. | PaaE-like NADH oxidoreductase-possibly involved in phenylacetic acid degradation. | 0.634 |
GFO_1047 | fabD | GFO_1047 | GFO_0276 | 3-hydroxyacyl-CoA dehydrogenase. | Malonyl CoA-acyl carrier protein transacylase. | 0.557 |
GFO_1047 | maeB | GFO_1047 | GFO_0179 | 3-hydroxyacyl-CoA dehydrogenase. | NADP-dependent malic enzyme. | 0.686 |
GFO_1566 | GFO_3157 | GFO_1566 | GFO_3157 | Conserved hypothetical protein. | Short-chain dehydrogenase/reductase family protein. | 0.495 |
GFO_1698 | GFO_3157 | GFO_1698 | GFO_3157 | Sulfatase. | Short-chain dehydrogenase/reductase family protein. | 0.597 |
GFO_3157 | GFO_0359 | GFO_3157 | GFO_0359 | Short-chain dehydrogenase/reductase family protein. | Sulfatase. | 0.620 |
GFO_3157 | GFO_1047 | GFO_3157 | GFO_1047 | Short-chain dehydrogenase/reductase family protein. | 3-hydroxyacyl-CoA dehydrogenase. | 0.406 |
GFO_3157 | GFO_1566 | GFO_3157 | GFO_1566 | Short-chain dehydrogenase/reductase family protein. | Conserved hypothetical protein. | 0.495 |
GFO_3157 | GFO_1698 | GFO_3157 | GFO_1698 | Short-chain dehydrogenase/reductase family protein. | Sulfatase. | 0.597 |
GFO_3157 | GFO_3158 | GFO_3157 | GFO_3158 | Short-chain dehydrogenase/reductase family protein. | Membrane protein. | 0.790 |
GFO_3157 | GFO_3277 | GFO_3157 | GFO_3277 | Short-chain dehydrogenase/reductase family protein. | PaaE-like NADH oxidoreductase-possibly involved in phenylacetic acid degradation. | 0.436 |
GFO_3157 | fabD | GFO_3157 | GFO_0276 | Short-chain dehydrogenase/reductase family protein. | Malonyl CoA-acyl carrier protein transacylase. | 0.509 |
GFO_3157 | gor-2 | GFO_3157 | GFO_3156 | Short-chain dehydrogenase/reductase family protein. | Glutathione reductase. | 0.798 |
GFO_3157 | maeB | GFO_3157 | GFO_0179 | Short-chain dehydrogenase/reductase family protein. | NADP-dependent malic enzyme. | 0.410 |
GFO_3157 | mfd | GFO_3157 | GFO_3159 | Short-chain dehydrogenase/reductase family protein. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.529 |
GFO_3158 | GFO_3157 | GFO_3158 | GFO_3157 | Membrane protein. | Short-chain dehydrogenase/reductase family protein. | 0.790 |
GFO_3158 | gor-2 | GFO_3158 | GFO_3156 | Membrane protein. | Glutathione reductase. | 0.773 |
GFO_3158 | mfd | GFO_3158 | GFO_3159 | Membrane protein. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.529 |
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