STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3158Membrane protein. (133 aa)    
Predicted Functional Partners:
ushA
Periplasmic 5'-nucleotidase; Belongs to the 5'-nucleotidase family.
     
  0.900
GFO_1279
Periplasmic 5'-nucleotidase; Belongs to the 5'-nucleotidase family.
     
  0.900
GFO_3157
Short-chain dehydrogenase/reductase family protein.
  
   0.790
gor-2
Glutathione reductase.
       0.773
GFO_2639
Membrane protein.
  
     0.696
GFO_2642
HTH_3 family transcriptional regulator protein.
  
    0.610
GFO_2638
Conserved hypothetical protein.
  
   
 0.554
GFO_2637
Conserved hypothetical protein.
  
     0.544
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.529
GFO_0827
Conserved hypothetical protein, secreted.
  
     0.456
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.