STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3169Conserved hypothetical protein, secreted. (258 aa)    
Predicted Functional Partners:
GFO_3168
Tryptophan 2,3-dioxygenase.
   
   0.832
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
    0.805
GFO_3167
Peptidase, family M23.
       0.757
GFO_0212
Surface antigen D15 family outer membrane protein.
  
    0.606
lpxC/fabZ
LpxC/FabZ bifunctional enzyme; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
   
 0.563
GFO_3362
Protein containing metallophosphoesterase domain.
  
   
 0.555
GFO_3628
Prenyltransferase family protein.
 
     0.546
GFO_1791
Conserved hypothetical protein, membrane.
 
  
 0.475
GFO_0145
Conserved hypothetical protein, membrane.
  
     0.474
GFO_2530
Conserved hypothetical protein.
  
     0.474
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.