STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3207Conserved hypothetical protein. (155 aa)    
Predicted Functional Partners:
GFO_3206
TonB-dependent outer membrane receptor.
 
     0.876
zupT
ZIP family zinc transporter.
     
 0.547
GFO_3205
Iron dependent repressor.
       0.540
GFO_1885
Membrane protein.
  
 
 0.510
txn
Thioredoxin-like protein.
  
 
 0.467
GFO_0928
Thiol-disulfide oxidoreductase.
  
 
 0.467
GFO_1071
Conserved hypothetical protein, secreted.
  
 
 0.467
GFO_1277
Secreted protein containing a thioredoxin domain.
  
 
 0.467
trxA
Thioredoxin-like protein.
  
 
 0.467
resA
Thiol-disulfide oxidoreductase.
  
 
 0.467
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.