STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3209Protein containing DUF1094; Belongs to the UPF0403 family. (136 aa)    
Predicted Functional Partners:
bshC
Conserved hypothetical protein; Belongs to the BshC family.
  
   
 0.785
GFO_1633
Glycosyl transferase, group 1.
  
     0.769
GFO_2264
Conserved hypothetical protein.
  
  
 0.768
GFO_0376
FAD-dependent pyridine nucleotide-disulfde oxidoreductase.
  
  
 0.708
GFO_0762
Conserved hypothetical protein.
  
    0.647
GFO_1488
Conserved hypothetical protein.
  
     0.622
GFO_1635
Conserved hypothetical protein.
  
     0.593
trxA
Thioredoxin-like protein.
 
    0.592
GFO_3210
Phospholipid/glycerol acyltransferase.
       0.584
GFO_3211
Protein containing HD domain.
       0.584
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.