STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3277PaaE-like NADH oxidoreductase-possibly involved in phenylacetic acid degradation. (349 aa)    
Predicted Functional Partners:
paaK
phenylacetate-CoA ligase.
 
 
 0.939
capK
Capsular polysaccharide biosynthesis protein.
 
 
 0.930
gltD
Glutamate synthase (NADPH) small subunit.
   
 0.919
GFO_0170
Cytochrome P450.
  
 0.875
GFO_1472
Ferredoxin-like protein.
  
 
 0.869
sir
Ferredoxin-sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.766
iscS
Cysteine desulfurase.
  
 0.754
iscS-2
Cysteine desulfurase.
  
 0.754
GFO_1047
3-hydroxyacyl-CoA dehydrogenase.
  
  
 0.634
GFO_2166
Hydratase/decarboxylase family protein.
 
   
 0.606
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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