STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3293Membrane-bound lytic murein transglycosylase. (528 aa)    
Predicted Functional Partners:
GFO_3292
Conserved hypothetical protein.
 
 
 0.875
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
 
   
 0.710
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
  
    0.669
GFO_1639
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.662
GFO_2865
OmpA/MotB family outer membrane protein.
 
 
 0.661
mrdA
Penicillin-binding protein.
 
 
 0.661
GFO_2227
Secreted protein containing LysM domains.
 
  
 0.644
GFO_1838
OmpA/MotB family outer membrane protein.
 
 
 0.589
GFO_1070
Membrane-bound lytic murein transglycosylase.
 
  
0.571
GFO_3592
Conserved hypothetical protein, membrane or secreted.
 
    0.558
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.