STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3306Conserved hypothetical protein. (124 aa)    
Predicted Functional Partners:
GFO_3305
Membrane protein.
 
     0.947
GFO_3304
Hypothetical protein.
       0.784
GFO_3049
Secreted protein.
 
     0.589
GFO_2719
Hypothetical protein.
  
     0.580
GFO_0792
Hypothetical protein.
  
     0.572
GFO_3533
Conserved hypothetical protein.
 
    0.563
GFO_2212
Secreted protein.
  
     0.558
GFO_2793
Membrane protein, UPF0118.
 
     0.526
glnS
glutaminyl-tRNA synthetase.
       0.515
GFO_0154
Conserved hypothetical protein, membrane or secreted.
  
     0.496
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.