STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3330NlpC/P60 family protein. (407 aa)    
Predicted Functional Partners:
GFO_3329
Mandelate racemase / muconate lactonizing enzyme family protein.
 
  
 0.858
GFO_3328
Protein containing DUF187.
 
     0.738
dacB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine endopeptidase.
 
  
 0.478
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
       0.458
GFO_2754
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.442
GFO_2753
Secreted peptidase, family M14.
  
     0.436
GFO_3331
TonB-dependent outer membrane receptor.
       0.426
GFO_0006
Sugar-binding sensor histidine kinase/response regulator hybrid.
 
  
 0.414
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.