STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3335Lactoylglutathione lyase. (132 aa)    
Predicted Functional Partners:
mutB
methylmalonyl-CoA mutase large subunit.
  
 0.983
mutA
methylmalonyl-CoA mutase small subunit.
 
  
 0.977
GFO_0976
acyl-CoA carboxylase carboxyl transferase beta subunit.
 
 
 0.969
argK
Protein kinase ArgK.
  
 0.955
tpm
Thiopurine S-methyltransferase.
 
  
 0.676
GFO_1472
Ferredoxin-like protein.
  
  
 0.633
icmF
methylmalonyl-CoA mutase-like protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
  
 0.561
GFO_3333
LolC-like FtsX family membrane protein (predicted permease).
       0.555
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.555
GFO_1308
Membrane or secreted protein containing Rieske [2Fe-2S] domain.
   
    0.452
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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