STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3355Hypothetical protein. (245 aa)    
Predicted Functional Partners:
rsmI
Tetrapyrrole (corrin/porphyrin) methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
     
 0.806
GFO_1569
Secreted protein.
  
     0.752
GFO_3357
uracil-DNA glycosylase family protein.
       0.752
GFO_1888
Hypothetical protein.
  
     0.723
GFO_3280
Membrane protein.
  
     0.723
GFO_2355
Conserved hypothetical protein.
  
     0.707
GFO_0074
Hypothetical protein.
  
     0.706
GFO_1842
Hypothetical protein.
  
     0.706
GFO_2542
Conserved hypothetical protein, secreted.
  
     0.682
GFO_2698
acyl-CoA binding protein.
  
     0.674
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.