STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3430Peptidoglycan-binding LysM domain containing protein. (162 aa)    
Predicted Functional Partners:
GFO_1546
Conserved hypothetical protein.
   
  
 0.891
GFO_1041
Trehalose 6-phosphate synthase/phosphatase.
   
  
 0.818
GFO_0823
Conserved hypothetical protein.
   
  
 0.551
wrbA
Trp repressor binding protein; Belongs to the WrbA family.
   
  
 0.551
GFO_2047
Dps family ferritin-like DNA-binding protein; Belongs to the Dps family.
   
  
 0.550
kat
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.500
GFO_2291
Secreted protein containing PKD domain.
 
   0.433
hisB
Histidine biosynthesis bifunctional protein HisB; In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family.
  
    0.428
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.