STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3455PAP2 superfamily membrane protein. (191 aa)    
Predicted Functional Partners:
GFO_1216
Secreted PAP2 superfamily protein.
  
  
 
0.901
GFO_1224
Two-component system sensor histidine kinase.
 
    0.725
GFO_1223
TonB-dependent outer membrane receptor.
  
     0.543
GFO_1225
Two-component system response regulator.
 
    0.537
menE
O-succinylbenzoyl-CoA synthetase.
   
 0.521
GFO_3452
Conserved hypothetical protein, secreted.
 
     0.514
GFO_0170
Cytochrome P450.
   
  0.498
GFO_1296
Conserved hypothetical protein, membrane.
  
     0.488
GFO_1249
Membrane protein.
  
     0.486
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.474
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.