STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3462Two-component system sensor histidine kinase/response regulator hybrid. (932 aa)    
Predicted Functional Partners:
GFO_3464
SusD/RagB family protein.
 
     0.854
GFO_3463
TonB-dependent outer membrane receptor.
 
     0.853
GFO_3465
Conserved hypothetical protein.
 
    0.816
GFO_3466
Glycosyl hydrolase, family 16.
 
     0.760
GFO_3461
Conserved hypothetical protein, secreted.
 
     0.603
GFO_3468
Glycosyl hydrolase, family 16.
 
     0.572
GFO_0364
Conserved hypothetical protein.
 
     0.511
GFO_1712
SusD/RagB family protein.
 
     0.507
GFO_0363
Conserved hypothetical protein, membrane or secreted.
 
     0.482
GFO_0848
Two-component system sensor histidine kinase/response regulator hybrid.
  
 
 0.463
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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