STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3464SusD/RagB family protein. (493 aa)    
Predicted Functional Partners:
GFO_3463
TonB-dependent outer membrane receptor.
     0.954
GFO_3465
Conserved hypothetical protein.
 
    0.926
GFO_3466
Glycosyl hydrolase, family 16.
     0.923
GFO_3462
Two-component system sensor histidine kinase/response regulator hybrid.
 
     0.854
bglX-2
Beta-glucosidase.
 
  
 0.702
GFO_3468
Glycosyl hydrolase, family 16.
 
     0.699
GFO_0360
Sensor/regulator hybrid.
  
     0.663
GFO_0361
TonB-dependent outer membrane receptor.
 
   0.645
GFO_2629
Conserved hypothetical protein.
  
 
   0.606
GFO_0688
TonB-dependent outer membrane receptor.
 
   0.548
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.