STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3505Vitamin K-dependent gamma-carboxylase. (439 aa)    
Predicted Functional Partners:
ribF/ribC
Riboflavin kinase / FAD synthetase; Belongs to the ribF family.
       0.797
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
       0.782
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
     
 0.489
GFO_2049
Conserved hypothetical protein, membrane or secreted.
  
     0.484
GFO_3461
Conserved hypothetical protein, secreted.
  
     0.480
GFO_3374
OmpA/MotB family outer membrane protein containing thrombospondin 3 repeats.
  
    0.473
GFO_2514
Conserved hypothetical protein, secreted.
 
     0.465
GFO_3260
Glucose-1-phosphate thymidylyltransferase.
  
     0.465
serS
seryl-tRNA synthetase.
       0.441
GFO_3508
Conserved hypothetical protein.
 
     0.437
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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