STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3604TonB-dependent outer membrane receptor. (1071 aa)    
Predicted Functional Partners:
GFO_3605
Conserved hypothetical protein, membrane or secreted.
     0.887
GFO_3606
Sodium:solute symporter family protein.
 
    0.863
GFO_3607
Conserved hypothetical protein.
 
     0.861
GFO_3603
Conserved hypothetical protein.
 
     0.774
GFO_3602
Radical SAM superfamily protein.
       0.610
GFO_2515
Conserved hypothetical protein, secreted.
  
 
   0.532
GFO_2845
SusD/RagB family protein.
  
     0.499
GFO_3601
Carboxymuconolactone decarboxylase family protein-possibly antioxidant defence related; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.493
GFO_1252
Conserved hypothetical protein, secreted.
  
 
   0.487
GFO_2577
Conserved hypothetical protein.
  
     0.483
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.