STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3609Conserved hypothetical protein. (205 aa)    
Predicted Functional Partners:
GFO_3613
Glycosyl transferase, family 2.
     0.993
punA
Purine nucleoside phosphorylase PunA; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
    
 0.940
GFO_3612
Secreted protein containing DUF547.
 
     0.907
GFO_3611
Protein containing SAM-binding motif.
 
     0.883
GFO_3602
Radical SAM superfamily protein.
 
     0.841
GFO_3608
Secreted protein containing rhodanese-like domain.
 
     0.826
GFO_3606
Sodium:solute symporter family protein.
 
     0.679
GFO_3607
Conserved hypothetical protein.
 
     0.666
GFO_3620
Conserved hypothetical protein, membrane.
 
     0.651
GFO_3618
RfbJ-like lipopolysaccharide biosynthesis glycosyl transferase.
 
     0.625
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.