STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_3617Iron-sulfur binding transmembrane protein. (531 aa)    
Predicted Functional Partners:
GFO_3616
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
  
 0.950
GFO_3618
RfbJ-like lipopolysaccharide biosynthesis glycosyl transferase.
 
     0.901
GFO_3620
Conserved hypothetical protein, membrane.
 
     0.887
sdhA
Succinate dehydrogenase flavoprotein subunit.
  
 
 0.842
GFO_3619
Transmembrane family-2 glycosyl transferase-possibly involved in biofilm formation.
 
     0.840
GFO_3614
Conserved hypothetical protein, secreted.
 
     0.836
etfB
Electron transfer flavoprotein subunit beta.
   
 
 0.784
GFO_1814
Hypothetical protein.
  
     0.739
GFO_0971
Sterol desaturase family protein.
  
     0.733
GFO_2269
Conserved hypothetical protein.
  
     0.729
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.