K7X8C3_SOLTU protein (Solanum tuberosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

K7X8C3_SOLTU

Fiber protein Fb11. (65 aa)

Predicted Functional Partners:

M1ASK6_SOLTU

0.895

M1CNF0_SOLTU

0.895

M1ALR2_SOLTU

0.889

M1B4S0_SOLTU

0.889

M1ATB8_SOLTU

0.887

M1BQG7_SOLTU

0.886

M1BHW0_SOLTU

0.879

M1C0F2_SOLTU

0.872

ND3

0.872

M1A3V2_SOLTU

0.866

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K7X8C3_SOLTU	M1A3V2_SOLTU	K7X8C3	M1A3V2	Fiber protein Fb11.	Uncharacterized protein; Belongs to the complex I LYR family.	0.866
K7X8C3_SOLTU	M1ALR2_SOLTU	K7X8C3	M1ALR2	Fiber protein Fb11.	Uncharacterized protein.	0.889
K7X8C3_SOLTU	M1ASK6_SOLTU	K7X8C3	M1ASK6	Fiber protein Fb11.	Uncharacterized protein.	0.895
K7X8C3_SOLTU	M1ATB8_SOLTU	K7X8C3	M1ATB8	Fiber protein Fb11.	Uncharacterized protein.	0.887
K7X8C3_SOLTU	M1B4S0_SOLTU	K7X8C3	M1B4S0	Fiber protein Fb11.	Uncharacterized protein.	0.889
K7X8C3_SOLTU	M1BHW0_SOLTU	K7X8C3	M1BHW0	Fiber protein Fb11.	Uncharacterized protein.	0.879
K7X8C3_SOLTU	M1BQG7_SOLTU	K7X8C3	M1BQG7	Fiber protein Fb11.	Uncharacterized protein.	0.886
K7X8C3_SOLTU	M1C0F2_SOLTU	K7X8C3	M1C0F2	Fiber protein Fb11.	NADH-u_ox-rdase domain-containing protein.	0.872
K7X8C3_SOLTU	M1CNF0_SOLTU	K7X8C3	M1CNF0	Fiber protein Fb11.	Uncharacterized protein.	0.895
K7X8C3_SOLTU	ND3	K7X8C3	O99869	Fiber protein Fb11.	NADH-ubiquinone oxidoreductase chain 3; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity).	0.872
M1A3V2_SOLTU	K7X8C3_SOLTU	M1A3V2	K7X8C3	Uncharacterized protein; Belongs to the complex I LYR family.	Fiber protein Fb11.	0.866
M1A3V2_SOLTU	M1ALR2_SOLTU	M1A3V2	M1ALR2	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.910
M1A3V2_SOLTU	M1ASK6_SOLTU	M1A3V2	M1ASK6	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.911
M1A3V2_SOLTU	M1ATB8_SOLTU	M1A3V2	M1ATB8	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.758
M1A3V2_SOLTU	M1B4S0_SOLTU	M1A3V2	M1B4S0	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.922
M1A3V2_SOLTU	M1BHW0_SOLTU	M1A3V2	M1BHW0	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.935
M1A3V2_SOLTU	M1BQG7_SOLTU	M1A3V2	M1BQG7	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.635
M1A3V2_SOLTU	M1C0F2_SOLTU	M1A3V2	M1C0F2	Uncharacterized protein; Belongs to the complex I LYR family.	NADH-u_ox-rdase domain-containing protein.	0.936
M1A3V2_SOLTU	M1CNF0_SOLTU	M1A3V2	M1CNF0	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.938
M1A3V2_SOLTU	ND3	M1A3V2	O99869	Uncharacterized protein; Belongs to the complex I LYR family.	NADH-ubiquinone oxidoreductase chain 3; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity).	0.954