STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M0ZZY5_SOLTUUncharacterized protein. (1115 aa)    
Predicted Functional Partners:
M1ADF8_SOLTU
Uncharacterized protein.
    
 0.991
M1AID5_SOLTU
Matrin-type domain-containing protein.
   
 0.988
M1B451_SOLTU
Uncharacterized protein.
    
 0.988
M0ZX29_SOLTU
Matrin-type domain-containing protein.
    
 0.987
M1CJW9_SOLTU
Splicing factor subunit; Belongs to the SF3B5 family.
    
 0.986
M1CYM7_SOLTU
CPSF_A domain-containing protein.
    
 0.984
M1BSD7_SOLTU
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
   
 0.983
M1BXE8_SOLTU
Uncharacterized protein.
   
 0.973
M1CPZ1_SOLTU
Sm domain-containing protein.
   
 0.971
M1AT84_SOLTU
Small nuclear ribonucleoprotein Sm D2.
   
 0.970
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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