STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M1A134_SOLTUUncharacterized protein. (653 aa)    
Predicted Functional Partners:
M1BFT9_SOLTU
Photolyase/cryptochrome alpha/beta domain-containing protein.
     
 0.945
M1BMC0_SOLTU
Uncharacterized protein.
    
 0.942
PHYB
Phytochrome B; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductas [...]
    
 0.934
M1AG20_SOLTU
Photolyase/cryptochrome alpha/beta domain-containing protein.
     
 0.931
M1B157_SOLTU
Uncharacterized protein.
    
 0.871
M1B388_SOLTU
Uncharacterized protein.
    
 0.871
M1BCL5_SOLTU
TCP domain-containing protein.
      
 0.840
M1A622_SOLTU
WD_REPEATS_REGION domain-containing protein.
    
 0.814
M1BQ07_SOLTU
Uncharacterized protein.
   
 
 0.810
M1D6G5_SOLTU
Uncharacterized protein.
   
 
 0.810
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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