STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M1ATB5_SOLTUC1_2 domain-containing protein. (441 aa)    
Predicted Functional Partners:
M1B7B6_SOLTU
Uncharacterized protein.
    
 0.549
M1BSD7_SOLTU
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.466
M1AT84_SOLTU
Small nuclear ribonucleoprotein Sm D2.
    
 0.453
M0ZXN6_SOLTU
Uncharacterized protein.
   
 0.405
M0ZXP0_SOLTU
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.405
M1CH87_SOLTU
PPIase cyclophilin-type domain-containing protein.
    
 0.405
M1CH90_SOLTU
ERCC4 domain-containing protein.
    
 0.405
M1CPZ1_SOLTU
Sm domain-containing protein.
    
  0.400
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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