M1AU16_SOLTU protein (Solanum tuberosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M1AU16_SOLTU

OBG-type G domain-containing protein. (400 aa)

Predicted Functional Partners:

M1B889_SOLTU

0.961

M1CP73_SOLTU

0.948

M0ZRB5_SOLTU

0.940

M0ZWN3_SOLTU

0.855

M1ADW0_SOLTU

0.855

M1AN91_SOLTU

0.855

M1AN95_SOLTU

0.855

M1ANA1_SOLTU

0.855

M1BVM5_SOLTU

0.855

M1CC54_SOLTU

0.855

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M0ZRB5_SOLTU	M1AU16_SOLTU	M0ZRB5	M1AU16	RWD domain-containing protein.	OBG-type G domain-containing protein.	0.940
M0ZRB5_SOLTU	M1CP73_SOLTU	M0ZRB5	M1CP73	RWD domain-containing protein.	Uncharacterized protein.	0.741
M0ZWN3_SOLTU	M1ADW0_SOLTU	M0ZWN3	M1ADW0	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.811
M0ZWN3_SOLTU	M1AN91_SOLTU	M0ZWN3	M1AN91	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.813
M0ZWN3_SOLTU	M1AN95_SOLTU	M0ZWN3	M1AN95	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.813
M0ZWN3_SOLTU	M1ANA1_SOLTU	M0ZWN3	M1ANA1	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.814
M0ZWN3_SOLTU	M1AU16_SOLTU	M0ZWN3	M1AU16	Uncharacterized protein; Belongs to the peptidase C1 family.	OBG-type G domain-containing protein.	0.855
M0ZWN3_SOLTU	M1B889_SOLTU	M0ZWN3	M1B889	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.962
M0ZWN3_SOLTU	M1BVM5_SOLTU	M0ZWN3	M1BVM5	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.811
M0ZWN3_SOLTU	M1CC54_SOLTU	M0ZWN3	M1CC54	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.812
M1ADW0_SOLTU	M0ZWN3_SOLTU	M1ADW0	M0ZWN3	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.811
M1ADW0_SOLTU	M1AN91_SOLTU	M1ADW0	M1AN91	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.815
M1ADW0_SOLTU	M1AN95_SOLTU	M1ADW0	M1AN95	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.813
M1ADW0_SOLTU	M1ANA1_SOLTU	M1ADW0	M1ANA1	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.815
M1ADW0_SOLTU	M1AU16_SOLTU	M1ADW0	M1AU16	Uncharacterized protein; Belongs to the peptidase C1 family.	OBG-type G domain-containing protein.	0.855
M1ADW0_SOLTU	M1B889_SOLTU	M1ADW0	M1B889	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.962
M1ADW0_SOLTU	M1BVM5_SOLTU	M1ADW0	M1BVM5	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.809
M1ADW0_SOLTU	M1CC54_SOLTU	M1ADW0	M1CC54	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.809
M1AN91_SOLTU	M0ZWN3_SOLTU	M1AN91	M0ZWN3	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.813
M1AN91_SOLTU	M1ADW0_SOLTU	M1AN91	M1ADW0	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.815