STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M1B346_SOLTURibosomal_L16 domain-containing protein. (53 aa)    
Predicted Functional Partners:
M1C5C5_SOLTU
Uncharacterized protein.
   
 
 0.950
rpl36
50S ribosomal protein L36, chloroplastic.
  
 
 0.938
rpl2-A
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
  
 0.937
M0ZND0_SOLTU
Uncharacterized protein.
  
 0.936
rps16
30S ribosomal protein S16, chloroplastic.
   
 
 0.933
rpl20
50S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 0.931
M1AH18_SOLTU
Ribosomal_L2 domain-containing protein.
  
 0.925
M1C7B2_SOLTU
Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.
  
 0.921
M1BC62_SOLTU
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
  
 
 0.920
M1AMN3_SOLTU
Ribosomal_TL5_C domain-containing protein.
   
 
 0.919
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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