STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M1C5C3_SOLTURRM domain-containing protein. (235 aa)    
Predicted Functional Partners:
M1AH41_SOLTU
HAUS-augmin3 domain-containing protein.
   
 0.972
M1CXC5_SOLTU
Uncharacterized protein.
   
 0.963
M1CPZ1_SOLTU
Sm domain-containing protein.
    
 0.851
M1AK31_SOLTU
Uncharacterized protein.
    
  0.829
M0ZY41_SOLTU
SNRNP27 domain-containing protein.
    
  0.824
M1ABR1_SOLTU
Uncharacterized protein.
   
 0.811
M1CB01_SOLTU
Uncharacterized protein.
   
 0.811
M1AT84_SOLTU
Small nuclear ribonucleoprotein Sm D2.
   
  0.774
M1CWH0_SOLTU
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
    
 0.720
M1BK86_SOLTU
Uncharacterized protein.
   
  0.715
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.