M1C8A8_SOLTU protein (Solanum tuberosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M1C8A8_SOLTU

FBPase domain-containing protein; Belongs to the FBPase class 1 family. (340 aa)

Predicted Functional Partners:

M1AX74_SOLTU

0.751

M1AX76_SOLTU

0.751

M1CCE3_SOLTU

0.751

M1A0X2_SOLTU

0.645

PotTal1

0.645

M1A9Z4_SOLTU

0.641

M1B6I9_SOLTU

0.641

M1BZW7_SOLTU

0.641

TK

0.641

M1ACP5_SOLTU

0.612

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M1A0X2_SOLTU	M1A9Z4_SOLTU	M1A0X2	M1A9Z4	Uncharacterized protein.	TRANSKETOLASE_1 domain-containing protein.	0.996
M1A0X2_SOLTU	M1ACP5_SOLTU	M1A0X2	M1ACP5	Uncharacterized protein.	Uncharacterized protein.	0.857
M1A0X2_SOLTU	M1AX74_SOLTU	M1A0X2	M1AX74	Uncharacterized protein.	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.	0.502
M1A0X2_SOLTU	M1AX76_SOLTU	M1A0X2	M1AX76	Uncharacterized protein.	Uncharacterized protein.	0.502
M1A0X2_SOLTU	M1B6I9_SOLTU	M1A0X2	M1B6I9	Uncharacterized protein.	Transket_pyr domain-containing protein.	0.890
M1A0X2_SOLTU	M1BZW7_SOLTU	M1A0X2	M1BZW7	Uncharacterized protein.	TRANSKETOLASE_1 domain-containing protein.	0.890
M1A0X2_SOLTU	M1C8A8_SOLTU	M1A0X2	M1C8A8	Uncharacterized protein.	FBPase domain-containing protein; Belongs to the FBPase class 1 family.	0.645
M1A0X2_SOLTU	M1CCE3_SOLTU	M1A0X2	M1CCE3	Uncharacterized protein.	Aldolase_II domain-containing protein.	0.502
M1A0X2_SOLTU	PotTal1	M1A0X2	M1CPM6	Uncharacterized protein.	Uncharacterized protein.	0.900
M1A0X2_SOLTU	TK	M1A0X2	Q43848	Uncharacterized protein.	Transketolase, chloroplastic; Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose- 4-phosphate or ribose-5-phosphate, respectively.	0.996
M1A9Z4_SOLTU	M1A0X2_SOLTU	M1A9Z4	M1A0X2	TRANSKETOLASE_1 domain-containing protein.	Uncharacterized protein.	0.996
M1A9Z4_SOLTU	M1AX74_SOLTU	M1A9Z4	M1AX74	TRANSKETOLASE_1 domain-containing protein.	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.	0.654
M1A9Z4_SOLTU	M1AX76_SOLTU	M1A9Z4	M1AX76	TRANSKETOLASE_1 domain-containing protein.	Uncharacterized protein.	0.654
M1A9Z4_SOLTU	M1C8A8_SOLTU	M1A9Z4	M1C8A8	TRANSKETOLASE_1 domain-containing protein.	FBPase domain-containing protein; Belongs to the FBPase class 1 family.	0.641
M1A9Z4_SOLTU	M1CCE3_SOLTU	M1A9Z4	M1CCE3	TRANSKETOLASE_1 domain-containing protein.	Aldolase_II domain-containing protein.	0.654
M1A9Z4_SOLTU	PotTal1	M1A9Z4	M1CPM6	TRANSKETOLASE_1 domain-containing protein.	Uncharacterized protein.	0.998
M1A9Z4_SOLTU	TK	M1A9Z4	Q43848	TRANSKETOLASE_1 domain-containing protein.	Transketolase, chloroplastic; Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose- 4-phosphate or ribose-5-phosphate, respectively.	0.900
M1ACP5_SOLTU	M1A0X2_SOLTU	M1ACP5	M1A0X2	Uncharacterized protein.	Uncharacterized protein.	0.857
M1ACP5_SOLTU	M1AX74_SOLTU	M1ACP5	M1AX74	Uncharacterized protein.	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.	0.654
M1ACP5_SOLTU	M1AX76_SOLTU	M1ACP5	M1AX76	Uncharacterized protein.	Uncharacterized protein.	0.654