STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M1CB40_SOLTUPectinesterase; In the C-terminal section; belongs to the pectinesterase family. (542 aa)    
Predicted Functional Partners:
M0ZYZ4_SOLTU
Pectate lyase.
  
 
  0.732
M0ZJT8_SOLTU
Pectate lyase.
    
  0.655
M0ZLE8_SOLTU
Pectate lyase.
    
  0.655
M0ZX26_SOLTU
Pectate lyase.
    
  0.655
M1A3P9_SOLTU
Pectate lyase.
    
  0.655
M1A3Q0_SOLTU
Pectate lyase.
    
  0.655
M1A9L7_SOLTU
Pectate lyase.
    
  0.655
M1A9L8_SOLTU
Pectate lyase.
    
  0.655
M1AQF5_SOLTU
Pectate lyase.
    
  0.655
M1AYA6_SOLTU
Pectate lyase.
    
  0.655
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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