M1CB74_SOLTU protein (Solanum tuberosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M1CB74_SOLTU

Exonuclease domain-containing protein. (356 aa)

Predicted Functional Partners:

M1CZM1_SOLTU

0.859

M1AWA7_SOLTU

0.598

M1AQ25_SOLTU

0.562

M1AS11_SOLTU

0.562

M1BX71_SOLTU

0.542

M1BVM8_SOLTU

0.540

M0ZK07_SOLTU

0.529

M1AH72_SOLTU

0.529

M1B5Y9_SOLTU

0.529

M1CGB1_SOLTU

0.529

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M0ZK07_SOLTU	M1AH72_SOLTU	M0ZK07	M1AH72	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	RNB domain-containing protein.	0.645
M0ZK07_SOLTU	M1BVM8_SOLTU	M0ZK07	M1BVM8	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	HRDC domain-containing protein.	0.981
M0ZK07_SOLTU	M1CB74_SOLTU	M0ZK07	M1CB74	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	Exonuclease domain-containing protein.	0.529
M1AH72_SOLTU	M0ZK07_SOLTU	M1AH72	M0ZK07	RNB domain-containing protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.645
M1AH72_SOLTU	M1BVM8_SOLTU	M1AH72	M1BVM8	RNB domain-containing protein.	HRDC domain-containing protein.	0.981
M1AH72_SOLTU	M1CB74_SOLTU	M1AH72	M1CB74	RNB domain-containing protein.	Exonuclease domain-containing protein.	0.529
M1AQ25_SOLTU	M1AWA7_SOLTU	M1AQ25	M1AWA7	Glutamine amidotransferase type-1 domain-containing protein.	Uncharacterized protein.	0.767
M1AQ25_SOLTU	M1CB74_SOLTU	M1AQ25	M1CB74	Glutamine amidotransferase type-1 domain-containing protein.	Exonuclease domain-containing protein.	0.562
M1AS11_SOLTU	M1AWA7_SOLTU	M1AS11	M1AWA7	Glutamine amidotransferase type-1 domain-containing protein.	Uncharacterized protein.	0.767
M1AS11_SOLTU	M1CB74_SOLTU	M1AS11	M1CB74	Glutamine amidotransferase type-1 domain-containing protein.	Exonuclease domain-containing protein.	0.562
M1AWA7_SOLTU	M1AQ25_SOLTU	M1AWA7	M1AQ25	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.767
M1AWA7_SOLTU	M1AS11_SOLTU	M1AWA7	M1AS11	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.767
M1AWA7_SOLTU	M1CB74_SOLTU	M1AWA7	M1CB74	Uncharacterized protein.	Exonuclease domain-containing protein.	0.598
M1B5Y9_SOLTU	M1BVM8_SOLTU	M1B5Y9	M1BVM8	Uncharacterized protein.	HRDC domain-containing protein.	0.962
M1B5Y9_SOLTU	M1CB74_SOLTU	M1B5Y9	M1CB74	Uncharacterized protein.	Exonuclease domain-containing protein.	0.529
M1BVM8_SOLTU	M0ZK07_SOLTU	M1BVM8	M0ZK07	HRDC domain-containing protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.981
M1BVM8_SOLTU	M1AH72_SOLTU	M1BVM8	M1AH72	HRDC domain-containing protein.	RNB domain-containing protein.	0.981
M1BVM8_SOLTU	M1B5Y9_SOLTU	M1BVM8	M1B5Y9	HRDC domain-containing protein.	Uncharacterized protein.	0.962
M1BVM8_SOLTU	M1CB74_SOLTU	M1BVM8	M1CB74	HRDC domain-containing protein.	Exonuclease domain-containing protein.	0.540
M1BVM8_SOLTU	M1CGB1_SOLTU	M1BVM8	M1CGB1	HRDC domain-containing protein.	Uncharacterized protein.	0.961