STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M1CBM9_SOLTUtRNA pseudouridine synthase. (389 aa)    
Predicted Functional Partners:
M1CX25_SOLTU
RPOLD domain-containing protein.
  
  
 0.816
M0ZXJ8_SOLTU
Uncharacterized protein.
   
 
 0.745
M1AWI4_SOLTU
Uncharacterized protein.
  
   0.659
M1CZE9_SOLTU
Uncharacterized protein.
   
 
 0.650
M1B5J4_SOLTU
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.624
M1CNA2_SOLTU
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.624
M1CNA3_SOLTU
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.624
M1A345_SOLTU
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.621
M1DE37_SOLTU
Uncharacterized protein.
   
 
 0.619
M1B5S9_SOLTU
Lactamase_B domain-containing protein.
   
 
 0.581
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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