STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M1CSW1_SOLTUProtein kinase domain-containing protein. (566 aa)    
Predicted Functional Partners:
M1BFN1_SOLTU
Uncharacterized protein; Belongs to the cyclin family.
    
 0.701
M1D4M0_SOLTU
Uncharacterized protein; Belongs to the cyclin family.
    
 0.701
M1AWX7_SOLTU
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
  
 
0.594
M1CDD7_SOLTU
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.538
M0ZWK6_SOLTU
CPSF_A domain-containing protein.
    
 
 0.524
M1CX25_SOLTU
RPOLD domain-containing protein.
   
 
 0.514
M1AK84_SOLTU
CYCLIN domain-containing protein; Belongs to the cyclin family.
     
 0.477
M1CAQ9_SOLTU
CYCLIN domain-containing protein; Belongs to the cyclin family.
     
 0.477
M1AFU9_SOLTU
Uncharacterized protein.
   
 0.436
M1BU42_SOLTU
Uncharacterized protein.
   
 0.436
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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