M1DE27_SOLTU protein (Solanum tuberosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M1DE27_SOLTU

Uncharacterized protein. (171 aa)

Predicted Functional Partners:

M1CW32_SOLTU

0.593

M1CPZ1_SOLTU

0.589

M0ZWB6_SOLTU

0.588

M1AHN9_SOLTU

0.586

M1CX25_SOLTU

0.540

M1BSD7_SOLTU

0.524

M1AT84_SOLTU

0.499

M0ZVP6_SOLTU

0.474

M1BRL6_SOLTU

0.474

M1C259_SOLTU

0.474

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M0ZVP6_SOLTU	M1AHN9_SOLTU	M0ZVP6	M1AHN9	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	Uncharacterized protein.	0.801
M0ZVP6_SOLTU	M1AT84_SOLTU	M0ZVP6	M1AT84	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	Small nuclear ribonucleoprotein Sm D2.	0.996
M0ZVP6_SOLTU	M1BRL6_SOLTU	M0ZVP6	M1BRL6	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.543
M0ZVP6_SOLTU	M1BSD7_SOLTU	M0ZVP6	M1BSD7	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.995
M0ZVP6_SOLTU	M1C259_SOLTU	M0ZVP6	M1C259	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.543
M0ZVP6_SOLTU	M1CPZ1_SOLTU	M0ZVP6	M1CPZ1	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	Sm domain-containing protein.	0.995
M0ZVP6_SOLTU	M1CW32_SOLTU	M0ZVP6	M1CW32	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	Cwf21 domain-containing protein.	0.931
M0ZVP6_SOLTU	M1CX25_SOLTU	M0ZVP6	M1CX25	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	RPOLD domain-containing protein.	0.705
M0ZVP6_SOLTU	M1DE27_SOLTU	M0ZVP6	M1DE27	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	Uncharacterized protein.	0.474
M0ZWB6_SOLTU	M1AHN9_SOLTU	M0ZWB6	M1AHN9	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	Uncharacterized protein.	0.658
M0ZWB6_SOLTU	M1CX25_SOLTU	M0ZWB6	M1CX25	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	RPOLD domain-containing protein.	0.851
M0ZWB6_SOLTU	M1DE27_SOLTU	M0ZWB6	M1DE27	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	Uncharacterized protein.	0.588
M1AHN9_SOLTU	M0ZVP6_SOLTU	M1AHN9	M0ZVP6	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.801
M1AHN9_SOLTU	M0ZWB6_SOLTU	M1AHN9	M0ZWB6	Uncharacterized protein.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.658
M1AHN9_SOLTU	M1AT84_SOLTU	M1AHN9	M1AT84	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.945
M1AHN9_SOLTU	M1BRL6_SOLTU	M1AHN9	M1BRL6	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.801
M1AHN9_SOLTU	M1BSD7_SOLTU	M1AHN9	M1BSD7	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.844
M1AHN9_SOLTU	M1C259_SOLTU	M1AHN9	M1C259	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.801
M1AHN9_SOLTU	M1CPZ1_SOLTU	M1AHN9	M1CPZ1	Uncharacterized protein.	Sm domain-containing protein.	0.927
M1AHN9_SOLTU	M1CX25_SOLTU	M1AHN9	M1CX25	Uncharacterized protein.	RPOLD domain-containing protein.	0.999