STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M1E043_SOLTUAA_TRNA_LIGASE_II domain-containing protein. (413 aa)    
Predicted Functional Partners:
M1CW40_SOLTU
TGS domain-containing protein.
 
   
  0.989
M1A6F4_SOLTU
AA_TRNA_LIGASE_II domain-containing protein.
  
  
 
0.905
M1BNC9_SOLTU
tRNA-binding domain-containing protein.
  
 
 0.864
M1CSY7_SOLTU
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.864
M1A989_SOLTU
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
 
 0.852
M1C5C5_SOLTU
Uncharacterized protein.
  
 
 0.797
M1CSC6_SOLTU
Tim44 domain-containing protein.
   
 
 0.765
M1D7T8_SOLTU
Uncharacterized protein.
   
 
 0.751
rpl22
50S ribosomal protein L22, chloroplastic; This protein binds specifically to 23S rRNA; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.751
M1AW32_SOLTU
Tr-type G domain-containing protein.
  
 0.740
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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