Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDR48620.1Transcriptional regulator, AraC family; KEGG: bce:BC3740 8.0e-11 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.65. (275 aa)    
Predicted Functional Partners:
EDR46762.1
Transcriptional regulator, AraC family; KEGG: bli:BL05281 1.6e-10 adaA; methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.971
EDR48623.1
Transcriptional regulator, AraC family; KEGG: bha:BH0394 9.7e-08 adaA; methylphosphotriester-DNA alkyltransferase (AraC/XylS family) K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.898
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.838
EDR47776.1
Hypothetical protein; KEGG: reh:H16_A1626 1.3e-06 rpoD1; DNA-directed RNA polymerase sigma subunit (RpoD) K00960; COG: COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Psort location: Cytoplasmic, score: 9.98.
    
 
 0.838
EDR48622.1
Transporter, major facilitator family protein; KEGG: eci:UTI89_C4210 2.6e-37 yicJ; hypothetical symporter YicJ K03292; COG: COG2211 Na+/melibiose symporter and related transporters; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.830
EDR48621.1
KEGG: cpr:CPR_0750 2.5e-231 beta-galactosidase K01190; COG: COG3250 Beta-galactosidase/beta-glucuronidase; Psort location: Cytoplasmic, score: 8.87.
 
     0.720
EDR46813.1
UbiC transcription regulator-associated domain protein; KEGG: reh:H16_A3019 3.4e-11 hutC; histidine utilization repressor; COG: COG2188 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.665
EDR47008.1
Cupin domain protein; KEGG: gsu:GSU2364 6.8e-07 mannose-6-phosphate isomerase K01809; COG: COG0662 Mannose-6-phosphate isomerase.
  
 
 0.646
EDR45445.1
Hypothetical protein.
  
  
 0.611
EDR46469.1
Transcriptional regulator, AraC family; KEGG: bce:BC3740 6.1e-10 ADA regulatory protein K00567; COG: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.593
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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