STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48599.1Hypothetical protein. (158 aa)    
Predicted Functional Partners:
EDR48598.1
Putative toxin-antitoxin system, toxin component; COG: NOG16913 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.554
EDR48597.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.0085 dam; adenine-specific DNA methyltransferase K06223; COG: COG2932 Predicted transcriptional regulator.
       0.537
EDR48600.1
COG: COG4636 Uncharacterized protein conserved in cyanobacteria; Psort location: Cytoplasmic, score: 8.87.
       0.462
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.